SELECT 
  cscart_products_categories.product_id, 
  GROUP_CONCAT(
    IF(
      cscart_products_categories.link_type = "M", 
      CONCAT(
        cscart_products_categories.category_id, 
        "M"
      ), 
      cscart_products_categories.category_id
    )
  ) AS category_ids, 
  product_position_source.position AS position 
FROM 
  cscart_products_categories 
  INNER JOIN cscart_categories ON cscart_categories.category_id = cscart_products_categories.category_id 
  AND cscart_categories.storefront_id IN (0, 1) 
  AND (
    cscart_categories.usergroup_ids = '' 
    OR FIND_IN_SET(
      0, cscart_categories.usergroup_ids
    ) 
    OR FIND_IN_SET(
      1, cscart_categories.usergroup_ids
    )
  ) 
  AND cscart_categories.status IN ('A', 'H') 
  LEFT JOIN cscart_products_categories AS product_position_source ON cscart_products_categories.product_id = product_position_source.product_id 
  AND product_position_source.category_id = 9 
WHERE 
  cscart_products_categories.product_id IN (
    4003, 4002, 4006, 4001, 4000, 4598, 2510, 
    2507, 2508, 2511, 2509, 3753, 489, 416, 
    3182, 3181, 494, 488, 492, 497, 495, 
    3656, 1610, 1606, 1608, 1609, 1676, 
    1675, 1607, 1677, 491, 1737, 1736, 100, 
    95, 6430, 6431, 7254, 7255, 4050, 4051, 
    4602, 4049, 4034, 4048, 4419, 4601, 
    4422
  ) 
GROUP BY 
  cscart_products_categories.product_id

Query time 0.00132

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "100.30"
    },
    "grouping_operation": {
      "using_filesort": false,
      "nested_loop": [
        {
          "table": {
            "table_name": "cscart_products_categories",
            "access_type": "range",
            "possible_keys": [
              "PRIMARY",
              "pt"
            ],
            "key": "pt",
            "used_key_parts": [
              "product_id"
            ],
            "key_length": "3",
            "rows_examined_per_scan": 108,
            "rows_produced_per_join": 108,
            "filtered": "100.00",
            "index_condition": "(`dbggbern`.`cscart_products_categories`.`product_id` in (4003,4002,4006,4001,4000,4598,2510,2507,2508,2511,2509,3753,489,416,3182,3181,494,488,492,497,495,3656,1610,1606,1608,1609,1676,1675,1607,1677,491,1737,1736,100,95,6430,6431,7254,7255,4050,4051,4602,4049,4034,4048,4419,4601,4422))",
            "cost_info": {
              "read_cost": "49.81",
              "eval_cost": "10.80",
              "prefix_cost": "60.61",
              "data_read_per_join": "1K"
            },
            "used_columns": [
              "product_id",
              "category_id",
              "link_type"
            ]
          }
        },
        {
          "table": {
            "table_name": "cscart_categories",
            "access_type": "eq_ref",
            "possible_keys": [
              "PRIMARY",
              "c_status",
              "p_category_id"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "category_id"
            ],
            "key_length": "3",
            "ref": [
              "dbggbern.cscart_products_categories.category_id"
            ],
            "rows_examined_per_scan": 1,
            "rows_produced_per_join": 5,
            "filtered": "5.00",
            "cost_info": {
              "read_cost": "27.00",
              "eval_cost": "0.54",
              "prefix_cost": "98.41",
              "data_read_per_join": "21K"
            },
            "used_columns": [
              "category_id",
              "usergroup_ids",
              "status",
              "storefront_id"
            ],
            "attached_condition": "((`dbggbern`.`cscart_categories`.`storefront_id` in (0,1)) and ((`dbggbern`.`cscart_categories`.`usergroup_ids` = '') or (0 <> find_in_set(0,`dbggbern`.`cscart_categories`.`usergroup_ids`)) or (0 <> find_in_set(1,`dbggbern`.`cscart_categories`.`usergroup_ids`))) and (`dbggbern`.`cscart_categories`.`status` in ('A','H')))"
          }
        },
        {
          "table": {
            "table_name": "product_position_source",
            "access_type": "eq_ref",
            "possible_keys": [
              "PRIMARY",
              "pt"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "category_id",
              "product_id"
            ],
            "key_length": "6",
            "ref": [
              "const",
              "dbggbern.cscart_products_categories.product_id"
            ],
            "rows_examined_per_scan": 1,
            "rows_produced_per_join": 5,
            "filtered": "100.00",
            "cost_info": {
              "read_cost": "1.35",
              "eval_cost": "0.54",
              "prefix_cost": "100.30",
              "data_read_per_join": "86"
            },
            "used_columns": [
              "product_id",
              "category_id",
              "position"
            ]
          }
        }
      ]
    }
  }
}

Result

product_id category_ids position
95 9,24,7M 0
100 24,9M 0
416 9M 0
488 9M 0
489 9M 0
491 9M 0
492 9M 0
494 9M 0
495 9M 0
497 9M 0
1606 9M 0
1607 9M 0
1608 9M 0
1609 9M 0
1610 9M 0
1675 9M 0
1676 9M 0
1677 9M 0
1736 9M 0
1737 9M 0
2507 24,9,7M 0
2508 24,9,7M 0
2509 24,9,7M 0
2510 24,9,7M 0
2511 24,9,7M 0
3181 9M 0
3182 24,9,7M 0
3656 9M 0
3753 9M 0
4000 9,24,7M 0
4001 24,9,7M 0
4002 9,24,7M 0
4003 24,9,7M 0
4006 9,24,7M 0
4034 39,9,24,7M 0
4048 7,9,39,24M 0
4049 39,9,24,7M 0
4050 7,9,39,24M 0
4051 39,9,24,7M 0
4419 24,9M 0
4422 24,9M 0
4598 9,24,7M 0
4601 24,9M 0
4602 39,9,24,7M 0
6430 9,24,7,558,1M 0
6431 9,24,7,558,1M 0
7254 9,24,585,7M 0
7255 9,24,585,7M 0